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Impact of spatial organization on a novel auxotrophic interaction among soil microbes
Jiang X, Zerfaß C, Feng S, Eichmann R, Asally M, Schäfer P, Soyer OS.
Accepted for publication ISME Journal
Ecological selection of siderophore-producing microbial taxa in response to heavy metal contamination
Hesse E, O'Brien S, Tromas N, Bayer F, Luján AM, van Veen EM, Hodgson DJ and Buckling A.
Engineering microbial communities using thermodynamic principles and electrical interfaces.
Zerfaß C, Chen J and Soyer OS.
Current Opinion in Biotechnology
A Single Community Dominates Structure and Function of a Mixture of Multiple Methanogenic Communities
Sierocinski P, Milferstedt K, Bayer F, Großkopf T, Alston M, Bastkowski S, Swarbreck D, Hobbs PJ, Soyer OS, Hamelin J and Buckling A.
Dynamics of two methanogenic microbiomes incubated in polycyclic aromatic hydrocarbons, naphthenic acids, and oil field produced water
Oko B, Tao Y and Stuckey DC
Biotechnology for Biofuels
MI-Sim: A MATLAB package for the numerical analysis of microbial ecological interactions
Wade MJ, Oakley J, Harbisher S, Parker NG, Dolfing J
12(3): e0173249 (2017)
Predicting the dynamics and heterogeneity of genomic DNA content within bacterial populations across variable growth regimes
du Lac M, Scarpelli AH, Bates DG, and Leonard JN
ACS Synthetic biology
Generalised approach to modelling a three-tiered microbial food-web
Sari T. and Wade M.
Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community
Gómez P, Paterson S, De Meester L, Liu X, Lenzi L, Sharma MD, McElroy K and Buckling A.
Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment.
Großkopf T, Consuegra J, Gaffé J, Willison JC, Lenski RE, Soyer OS, and Schneider D.
BMC Evolutionary Biology
A stable genetic polymorphism underpinning microbial syntrophy
Großkopf T, Simone Z, Alston M, Folkes L, Swarbreck D, Soyer OS
Microbial diversity arising from thermodynamic constraints
Großkopf T. and Soyer OS.
Challenges in microbial ecology: building predictive understanding of community function and dynamics.
Widder S, Curtis TP, Großkopf T, et. al and Soyer OS
Perspectives in mathematical modelling for microbial ecology
M.J. Wade, J. Harmand, B. Benyahia, T. Bouchez, S. Chaillou, B. Cloez, J.-J. Godon, B. Moussa Boudjemaa, A. Rapaport, T. Sari, R. Arditi, C. Lobry
321, 64-74 (2016).
Emergent behaviour in a chlorophenol-mineralising three-tiered microbial `food web'
M. J. Wade, R. W. Pattinson, N. G. Parker and J. Dolfing
Journal of Theoretical Biology
Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii
K.J. Jones, K. Moore, C. Sambles, J. Love, D.J. Studholme, S.J. Aves
Microbial population dynamics during long-term sludge adaptation of thermophilic and mesophilic sequencing batch digesters treating sewage fine sieved fraction at varying organic loading rates
D.S.M. Ghasimi1, Y. Tao, M. de Kreuk1, M. H. Zandvoort and J. B. van Lier
The Gibbs free energy of formation of halogenated benzenes, benzoates and phenols and their potential role as electron acceptors in anaerobic environments
Jan Dolfing and Igor Novak
Some (bacilli) like it hot: genomics of Geobacillus species
Syntrophy in Microbial Fuel Cells
The ISME Journal
Synthetic Microbial Communities
Tobias Grosskopf and Orkun Soyer
Current Opinion in Microbiology
The interplay between microevolution and community structure in microbial populations
Siobhán O'Brien, David J Hodgson and Angus Buckling
Current Opinion in Biotechnology
Syntrophic Propionate Oxidation via Butyrate: a Novel Window of Opportunity under Methanogenic Conditions
Applied and Environmental Microbiology