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Dynamics of two methanogenic microbiomes incubated in polycyclic aromatic hydrocarbons, naphthenic acids, and oil field produced water
Oko B, Tao Y and Stuckey DC
Biotechnology for Biofuels 10:123
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Predicting the dynamics and heterogeneity of genomic DNA content within bacterial populations across variable growth regimes
du Lac M, Scarpelli AH, Bates DG, and Leonard JN
ACS Synthetic biology advance online publication 30 September 2016, doi: 10.1021/acssynbio.5b00217
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Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community
Gómez P, Paterson S, De Meester L, Liu X, Lenzi L, Sharma MD, McElroy K and Buckling A.
Nature Communications (2016) 7:12453
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Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment.
Großkopf T, Consuegra J, Gaffé J, Willison JC, Lenski RE, Soyer OS, and Schneider D.
BMC Evolutionary Biology (2016) 16:163
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A stable genetic polymorphism underpinning microbial syntrophy
Großkopf T, Simone Z, Alston M, Folkes L, Swarbreck D, Soyer OS
ISME Journal advance online publication 3 June 2016; doi: 10.1038/ismej.2016.80
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Microbial diversity arising from thermodynamic constraints
Großkopf T. and Soyer OS.
ISME Journal advance online publication 1 April 2016; doi: 10.1038/ismej.2016.49
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Generalised approach to modelling a three-tiered microbial food-web
Sari T. and Wade M.
ArXiv e-prints 1508.05256
Challenges in microbial ecology: building predictive understanding of community function and dynamics.
Widder S, Curtis TP, Großkopf T, et. al and Soyer OS
ISME Journal advance online publication 29 March 2016; doi: 10.1038/ismej.2016.45
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Perspectives in mathematical modelling for microbial ecology
M.J. Wade, J. Harmand, B. Benyahia, T. Bouchez, S. Chaillou, B. Cloez, J.-J. Godon, B. Moussa Boudjemaa, A. Rapaport, T. Sari, R. Arditi, C. Lobry
Ecological Modelling 321, 64-74 (2016).
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Emergent behaviour in a chlorophenol-mineralising three-tiered microbial `food web'
M. J. Wade, R. W. Pattinson, N. G. Parker and J. Dolfing
Journal of Theoretical Biology 389:171-186 (2016).
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Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii
K.J. Jones, K. Moore, C. Sambles, J. Love, D.J. Studholme, S.J. Aves
Genome Announcements 4:e01527-15 (2015).
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Microbial population dynamics during long-term sludge adaptation of thermophilic and mesophilic sequencing batch digesters treating sewage fine sieved fraction at varying organic loading rates
D.S.M. Ghasimi1, Y. Tao, M. de Kreuk1, M. H. Zandvoort and J. B. van Lier
Biotechnol Biofuels 8:171 (2015).
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The Gibbs free energy of formation of halogenated benzenes, benzoates and phenols and their potential role as electron acceptors in anaerobic environments
Jan Dolfing and Igor Novak
Biodegradation 26(1):15-27 (2015).
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Some (bacilli) like it hot: genomics of Geobacillus species
David Studholme
Microbial Biotechnology 8(1):40-48 (2015).
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Syntrophy in Microbial Fuel Cells
Jan Dolfing
The ISME Journal 8(1):4-5 (2014).
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Synthetic Microbial Communities
Tobias Grosskopf and Orkun Soyer
Current Opinion in Microbiology 18:72-77 (2014).
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The interplay between microevolution and community structure in microbial populations
Siobhán O'Brien, David J Hodgson and Angus Buckling
Current Opinion in Biotechnology 24:821-825 (2013).
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Syntrophic Propionate Oxidation via Butyrate: a Novel Window of Opportunity under Methanogenic Conditions
Dolfing, J.
Applied and Environmental Microbiology 79(14):4515-4516 (2013).
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